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RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly differ
deseq2 RNA-Seq uniform distribution data visualization
updated 4.6 years ago by ★ 13k • written 4.6 years ago by ▴ 20
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how to construct mds plot of differentially expressed genes?
differentially expressed genes mds plot data visualization
5.5 years ago pratikshasharma47 • 0
1
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1.2k
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Job: Summer Vacation Studentships in Data Science, MRC Cancer Unit, University of Cambridge, UK
data science data visualization machine learning cancer Job
6.5 years ago • updated 6.3 years ago Shamith.Samarajiwa ▴ 180
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923
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Visualize FlowSet by Date
FlowSet data visualization cellcounts
7.3 years ago Maria • 0
0
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1
reply
696
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DNA Deferential metheylation
data visualization
7.8 years ago tarek_2050 • 0
1
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1
reply
2.1k
views
Using pathview with uncommon species leads to Errors
pathview Kegg rnaseq data visualization
updated 8.2 years ago by ★ 1.6k • written 8.2 years ago by • 0
0
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1
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2.1k
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Pathview: visualization of data
pathview data visualization
updated 8.6 years ago by ★ 1.6k • written 8.6 years ago by ★ 4.1k
0
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1
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2.6k
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Input file of NGS data for Pathview
rnaseq pathview data visualization
updated 8.9 years ago by ★ 1.6k • written 8.9 years ago by ▴ 10
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Job: Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics bioinformatician job data visualization Job
9.0 years ago Doe, Aimee ▴ 40
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12
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11k
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Deseq2 rlog or 'regular' normalization?
Deseq2 rlog transformation data visualization
9.0 years ago sunil.mangalam • 0
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Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20
Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …
Comment: miRTarRnaseq library by María Calvo • 0
Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…
Answer: heatmap with batch effect by James W. MacDonald 67k
You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …
Answer: how do I convert an Ilumn IDREF to a CPG loci by James W. MacDonald 67k
``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…
Answer: Which input data is acceptable for MAST? by Andrew_McDavid ▴ 270
Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…
Votes
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Comment: Convert HGVS Representation back to Reference Genome Coordinates
Answer: How to control batch effect if Group and batch are same?
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